Package: geneSLOPE 0.38.1
geneSLOPE: Genome-Wide Association Study with SLOPE
Genome-wide association study (GWAS) performed with SLOPE, short for Sorted L-One Penalized Estimation, a method for estimating the vector of coefficients in linear model. In the first step of GWAS, SNPs are clumped according to their correlations and distances. Then, SLOPE is performed on data where each clump has one representative.
Authors:
geneSLOPE_0.38.1.tar.gz
geneSLOPE_0.38.1.zip(r-4.5)geneSLOPE_0.38.1.zip(r-4.4)geneSLOPE_0.38.1.zip(r-4.3)
geneSLOPE_0.38.1.tgz(r-4.5-any)geneSLOPE_0.38.1.tgz(r-4.4-any)geneSLOPE_0.38.1.tgz(r-4.3-any)
geneSLOPE_0.38.1.tar.gz(r-4.5-noble)geneSLOPE_0.38.1.tar.gz(r-4.4-noble)
geneSLOPE_0.38.1.tgz(r-4.4-emscripten)geneSLOPE_0.38.1.tgz(r-4.3-emscripten)
geneSLOPE.pdf |geneSLOPE.html✨
geneSLOPE/json (API)
| # Install 'geneSLOPE' in R: |
| install.packages('geneSLOPE', repos = c('https://psobczyk.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/psobczyk/geneslope/issues
Last updated 3 years agofrom:1c323d5abe. Checks:1 OK, 8 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 09 2025 |
| R-4.5-win | NOTE | Mar 09 2025 |
| R-4.5-mac | NOTE | Mar 09 2025 |
| R-4.5-linux | NOTE | Mar 09 2025 |
| R-4.4-win | NOTE | Mar 09 2025 |
| R-4.4-mac | NOTE | Mar 09 2025 |
| R-4.4-linux | NOTE | Mar 09 2025 |
| R-4.3-win | NOTE | Mar 09 2025 |
| R-4.3-mac | NOTE | Mar 09 2025 |
Exports:clump_snpsgui_geneSLOPEidentify_clumpread_phenotypescreen_snpsselect_snps
Dependencies:BHbigmemorybigmemory.sriclicodetoolscolorspacefansifarverforeachggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppArmadillorlangscalesSLOPEtibbleutf8uuidvctrsviridisLitewithr
