Package: geneSLOPE 0.38.1

geneSLOPE: Genome-Wide Association Study with SLOPE

Genome-wide association study (GWAS) performed with SLOPE, short for Sorted L-One Penalized Estimation, a method for estimating the vector of coefficients in linear model. In the first step of GWAS, SNPs are clumped according to their correlations and distances. Then, SLOPE is performed on data where each clump has one representative.

Authors:Damian Brzyski [aut], Christine Peterson [aut], Emmanuel J. Candes [aut], Malgorzata Bogdan [aut], Chiara Sabatti [aut], Piotr Sobczyk [cre, aut]

geneSLOPE_0.38.1.tar.gz
geneSLOPE_0.38.1.zip(r-4.5)geneSLOPE_0.38.1.zip(r-4.4)geneSLOPE_0.38.1.zip(r-4.3)
geneSLOPE_0.38.1.tgz(r-4.4-any)geneSLOPE_0.38.1.tgz(r-4.3-any)
geneSLOPE_0.38.1.tar.gz(r-4.5-noble)geneSLOPE_0.38.1.tar.gz(r-4.4-noble)
geneSLOPE_0.38.1.tgz(r-4.4-emscripten)geneSLOPE_0.38.1.tgz(r-4.3-emscripten)
geneSLOPE.pdf |geneSLOPE.html✨
geneSLOPE/json (API)

Peer review:

Bug tracker:https://github.com/psobczyk/geneslope/issues

On CRAN:

6 exports 3 stars 0.93 score 38 dependencies 7 scripts 186 downloads

Last updated 3 years agofrom:1c323d5abe. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:clump_snpsgui_geneSLOPEidentify_clumpread_phenotypescreen_snpsselect_snps

Dependencies:BHbigmemorybigmemory.sriclicodetoolscolorspacefansifarverforeachggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppArmadillorlangscalesSLOPEtibbleutf8uuidvctrsviridisLitewithr